diff --git a/src/khoj/database/management/commands/delete_orphaned_fileobjects.py b/src/khoj/database/management/commands/delete_orphaned_fileobjects.py
index 09a8ac29..f7efa1dd 100644
--- a/src/khoj/database/management/commands/delete_orphaned_fileobjects.py
+++ b/src/khoj/database/management/commands/delete_orphaned_fileobjects.py
@@ -16,52 +16,6 @@ class Command(BaseCommand):
         )
 
     def handle(self, *args, **options):
-        apply = options["apply"]
-
-        mode = "UPDATE" if apply else "DRY RUN"
-        self.stdout.write(f"[{mode}] Processing entries with null file_objects...")
-
-        # Create lookup dictionary of all file objects
-        file_objects_map = {(fo.user_id, fo.file_name): fo for fo in FileObject.objects.all()}
-
-        chunk_size = 1000
-        processed = 0
-        processed_entry_ids = set()
-
-        while True:
-            entries = list(
-                Entry.objects.select_related("user")
-                .filter(file_object__isnull=True)
-                .exclude(id__in=processed_entry_ids)
-                .only("id", "user", "file_path")[:chunk_size]
-            )
-
-            if not entries:
-                break
-
-            processed_entry_ids.update([entry.id for entry in entries])
-            entries_to_update = []
-
-            for entry in entries:
-                try:
-                    file_object = file_objects_map.get((entry.user_id, entry.file_path))
-                    if file_object:
-                        entry.file_object = file_object
-                        entries_to_update.append(entry)
-                except Exception as e:
-                    self.stdout.write(self.style.WARNING(f"Error processing entry {entry.id}: {str(e)}"))
-                    continue
-
-            if entries_to_update and apply:
-                with transaction.atomic():
-                    Entry.objects.bulk_update(entries_to_update, ["file_object"], batch_size=chunk_size)
-
-            processed += len(entries)
-            self.stdout.write(f"Processed {processed} entries")
-
-        action = "Updated" if apply else "Would update"
-        self.stdout.write(self.style.SUCCESS(f"{action} {len(processed_entry_ids)} entries"))
-
         # Find FileObjects with no related entries using subquery
         orphaned_files = FileObject.objects.annotate(
             has_entries=Exists(Entry.objects.filter(file_object=OuterRef("pk")))
diff --git a/src/khoj/database/migrations/0079_entry_file_object.py b/src/khoj/database/migrations/0079_entry_file_object.py
index d9a6166f..1b15b0a6 100644
--- a/src/khoj/database/migrations/0079_entry_file_object.py
+++ b/src/khoj/database/migrations/0079_entry_file_object.py
@@ -5,50 +5,44 @@ from django.db import migrations, models
 
 
 def migrate_entry_objects(apps, schema_editor):
-    pass
-    # Entry = apps.get_model("database", "Entry")
-    # FileObject = apps.get_model("database", "FileObject")
-    # db_alias = schema_editor.connection.alias
+    Entry = apps.get_model("database", "Entry")
+    FileObject = apps.get_model("database", "FileObject")
+    db_alias = schema_editor.connection.alias
 
-    # # Create lookup dictionary of all file objects
-    # file_objects_map = {(fo.user_id, fo.file_name): fo for fo in FileObject.objects.using(db_alias).all()}
+    # Process file objects in chunks
+    chunk_size = 1000
+    processed = 0
+    processed_file_ids = set()
 
-    # # Process entries in chunks of 1000
-    # chunk_size = 1000
-    # processed = 0
+    while True:
+        file_objects = list(
+            FileObject.objects.using(db_alias)
+            .exclude(id__in=processed_file_ids)
+            .select_related("user")
+            .only("id", "user", "file_name")[:chunk_size]
+        )
 
-    # processed_entry_ids = set()
+        if not file_objects:
+            break
 
-    # while True:
-    #     entries = list(
-    #         Entry.objects.using(db_alias)
-    #         .select_related("user")
-    #         .filter(file_object__isnull=True)
-    #         .exclude(id__in=processed_entry_ids)
-    #         .only("id", "user", "file_path")[:chunk_size]
-    #     )
+        processed_file_ids.update([fo.id for fo in file_objects])
 
-    #     if not entries:
-    #         break
+        for file_object in file_objects:
+            try:
+                # Find all entries matching this file object
+                matching_entries = Entry.objects.using(db_alias).filter(
+                    user_id=file_object.user_id, file_path=file_object.file_name, file_object__isnull=True
+                )
 
-    #     processed_entry_ids.update([entry.id for entry in entries])
+                if matching_entries.exists():
+                    # Update all matching entries in bulk
+                    matching_entries.update(file_object=file_object)
+            except Exception as e:
+                print(f"Error processing file object {file_object.id}: {str(e)}")
+                continue
 
-    #     entries_to_update = []
-    #     for entry in entries:
-    #         try:
-    #             file_object = file_objects_map.get((entry.user_id, entry.file_path))
-    #             if file_object:
-    #                 entry.file_object = file_object
-    #                 entries_to_update.append(entry)
-    #         except Exception as e:
-    #             print(f"Error processing entry {entry.id}: {str(e)}")
-    #             continue
-
-    #     if entries_to_update:
-    #         Entry.objects.using(db_alias).bulk_update(entries_to_update, ["file_object"], batch_size=chunk_size)
-
-    #     processed += len(entries)
-    #     print(f"Processed {processed} entries")
+        processed += len(file_objects)
+        print(f"Processed {processed} file objects")
 
 
 def reverse_migration(apps, schema_editor):