Remove unused imports. Fix typing and indentation

- Typing issues discovered using `mypy'. Fixed manually
- Unused imports discovered and fixed using `autoflake'
- Fix indentation in `org_to_jsonl' manually

src/utils/yaml.py

@@ -5,12 +5,13 @@ from pathlib import Path
 import yaml
 
 # Internal Packages
-from src.utils.helpers import get_absolute_path, resolve_absolute_path
 from src.utils.rawconfig import FullConfig
 
+
 # Do not emit tags when dumping to YAML
 yaml.emitter.Emitter.process_tag = lambda self, *args, **kwargs: None
 
+
 def save_config_to_file(yaml_config: dict, yaml_config_file: Path):
     "Write config to YML file"
     # Create output directory, if it doesn't exist