diff --git a/src/utils/cli.py b/src/utils/cli.py
index a426ba8c..7d8b3328 100644
--- a/src/utils/cli.py
+++ b/src/utils/cli.py
@@ -16,8 +16,6 @@ def cli(args=None):
 
     # Setup Argument Parser for the Commandline Interface
     parser = argparse.ArgumentParser(description="Expose API for Khoj")
-    parser.add_argument('--org-files', '-i', nargs='*', help="List of org-mode files to process")
-    parser.add_argument('--org-filter', type=str, default=None, help="Regex filter for org-mode files to process")
     parser.add_argument('--config-file', '-c', type=pathlib.Path, help="YAML file with user configuration")
     parser.add_argument('--regenerate', action='store_true', default=False, help="Regenerate model embeddings from source files. Default: false")
     parser.add_argument('--verbose', '-v', action='count', default=0, help="Show verbose conversion logs. Default: 0")
@@ -27,25 +25,18 @@ def cli(args=None):
 
     args = parser.parse_args(args)
 
-    if not (args.config_file or args.org_files):
-        print(f"Require at least 1 of --org-file, --org-filter or --config-file flags to be passed from commandline")
+    if not (args.config_file):
+        print(f"Need --config-file flag to be passed from commandline")
         exit(1)
 
-    # Config Priority: Cmd Args > Config File > Default Config
+    # Config Priority: Config File > Default Config
     args.config = default_config
     if args.config_file and resolve_absolute_path(args.config_file).exists():
         with open(get_absolute_path(args.config_file), 'r', encoding='utf-8') as config_file:
             config_from_file = yaml.safe_load(config_file)
             args.config = merge_dicts(priority_dict=config_from_file, default_dict=args.config)
-            args.config = FullConfig.parse_obj(args.config)
-    else:
-        args.config = FullConfig.parse_obj(args.config)
 
-    if args.org_files:
-        args.config.content_type.org.input_files = args.org_files
-
-    if args.org_filter:
-        args.config.content_type.org.input_filter = args.org_filter
+    args.config = FullConfig.parse_obj(args.config)
 
     return args